cortex.database.Database¶
- class cortex.database.Database[source]¶
Surface database
- Attributes:
- This database object dynamically generates handles to all subjects within the filestore.
Methods
__init__
([filestore])clear_cache
(subject[, clear_all_caches])Clears config-specified and default file caches for a subject.
get_anat
(subject[, type, xfmname, recache, ...])Return anatomical information from the filestore.
get_cache
(subject)get_coords
(subject, xfmname[, hemisphere, ...])Calculate the coordinates of each vertex in the epi space by transforming the fiducial to the coordinate space
get_mask
(subject, xfmname[, type])get_mnixfm
(subject, xfm[, template])Get transform from the space specified by xfm to MNI space.
get_mri_surf2surf_matrix
(subject, surface_type)Get matrix generated by surf2surf to map one subject's surface to another's
get_overlay
(subject[, overlay_file])get_paths
(subject)Get a dictionary with a list of all candidate filenames for associated data, such as roi overlays, flatmap caches, and ctm caches.
get_shared_voxels
(subject, xfmname[, hemi, ...])Get an array indicating which vertices are inappropriately mapped to the same voxel.
get_surf
(subject, type[, hemisphere, merge, ...])Return the surface pair for the given subject, surface type, and hemisphere.
get_surfinfo
(subject[, type, recache])Return auxiliary surface information from the filestore.
get_view
(vw, subject, name)Set the view for an open webshow instance from a saved view
get_xfm
(subject, name[, xfmtype])Retrieves a transform from the filestore
make_subj
(subject)Force the reload of the subject dictionary.
save_mask
(subject, xfmname, type, mask)save_view
(vw, subject, name[, is_overwrite])Set the view for an open webshow instance from a saved view
save_xfm
(subject, name, xfm[, xfmtype, ...])Load a transform into the surface database.
Attributes