cortex.freesurfer.autorecon¶

cortex.freesurfer.autorecon(fs_subject, type='all', parallel=True, n_cores=None)[source]¶

Run Freesurfer’s autorecon-all command for a given freesurfer subject

Parameters:

fs_subjectstring: Freesurfer subject ID (should be a folder in your freesurfer $SUBJECTS_DIR)
typestring: Which steps of autorecon-all to perform. {‘all’, ‘1’,’2’,’3’,’cp’,’wm’, ‘pia’}