cortex.mni.transform_to_mni

cortex.mni.transform_to_mni(volumedata, func_to_mni, template='/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz')

Transform data in volumedata to MNI space, resample at the resolution of the atlas image.

Parameters:

volumedataVolumeData

Data to be transformed to MNI space.

func_to_mninumpy.ndarray

Transformation matrix from the space of volumedata to MNI space. Get this from compute_mni_transform.

templatestr, optional

Path to MNI template volume, used as reference for flirt. Defaults to FSL’s MNI152_T1_1mm_brain.

Returns:

nibabel.nifti1.Nifti1Image

volumedata after transformation to MNI space.