cortex.freesurfer.import_flat

cortex.freesurfer.import_flat(fs_subject, patch, hemis=['lh', 'rh'], cx_subject=None, flat_type='freesurfer', auto_overwrite=False, freesurfer_subject_dir=None, clean=True)

Imports a flat brain from freesurfer

NOTE: This will delete the overlays.svg file for this subject, since THE FLATMAPS WILL CHANGE, as well as all cached information (e.g. old flatmap boundaries, roi svg intermediate renders, etc).

Parameters:

fs_subjectstr

Freesurfer subject name

patchstr

Name of flat.patch.3d file; e.g., “flattenv01”

hemislist

List of hemispheres to import. Defaults to both hemispheres.

cx_subjectstr

Pycortex subject name

freesurfer_subject_dirstr

directory for freesurfer subjects. None defaults to environment variable $SUBJECTS_DIR

cleanbool

If True, the flat surface is cleaned to remove the disconnected polys.

Returns: