cortex.dataset.Vertex2D¶
- class cortex.dataset.Vertex2D(dim1, dim2, subject=None, description='', cmap=None, vmin=None, vmax=None, vmin2=None, vmax2=None, **kwargs)[source]¶
Contains two vertex maps for simultaneous visualization. Includes information on how the maps should be jointly colormapped.
- Parameters:
- dim1ndarray or Vertex
The first vertex map. Can be a 1D array (see Vertex for details), or a Vertex.
- dim2ndarray or Vertex
The second vertex map. Can be a 1D array (see Vertex for details), or a Vertex.
- subjectstr, optional
Subject identifier. Must exist in the pycortex database. If not given, dim1 must be a Vertex from which the subject can be extracted.
- descriptionstr, optional
String describing this dataset. Displayed in webgl viewer.
- cmapstr, optional
Colormap (or colormap name) to use. If not given defaults to the default_cmap2d in your pycortex options.cfg file.
- vminfloat, optional
Minimum value in colormap for dim1. If not given defaults to TODO:WHAT
- vmaxfloat, optional
Maximum value in colormap for dim1. If not given defaults to TODO:WHAT
- vmin2float, optional
Minimum value in colormap for dim2. If not given defaults to TODO:WHAT
- vmax2float, optional
Maximum value in colormap for dim2. If not given defaults to TODO:WHAT
- **kwargs
All additional arguments in kwargs are passed to the VolumeData and Dataview
Methods
__init__(dim1, dim2[, subject, description, ...])blend_curvature(alpha[, threshold, ...])Blend the data with a curvature map depending on a transparency map.
copy(*args, **kwargs)from_hdf(node[, subject])Returns a dictionary with cmap information.
to_json([simple])uniques([collapse])Attributes
VertexRGB object containing the colormapped data from this object.